Info • Cochliobolus miyabeanus ATCC 44560 v1.0


May 2012. The genome of Cochliobolus miyabeanus ATCC 44560 was sequenced using Illumina technology and assembled using Velvet (version 1.1.04) and ALLPATHS (version r41043). There are no ESTs available for this organism.

Summary statistics for the Cochliobolus miyabeanus ATCC 44560 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.36
Sequencing read coverage depth 191x
# of contigs 667
# of scaffolds 619
# of scaffolds >= 2Kbp 498
Scaffold N50 68
Scaffold L50 (Mbp) 0.13
# of gaps 48
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.64, 0.50, 0.42

Gene Models FilteredModels1
length (bp) of: average median
gene 1479 1245
transcript 1339 1116
exon 506 281
intron 88 58
protein length (aa) 446 372
exons per gene 2.65 2
# of gene models 12007


B. Gillian Turgeon, Cornell University, USA

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.