Info • Colletotrichum acutatum CBS 112980 v2.0

Status

[April 2017] The Colletotrichum acutatum CBS 112980 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Colletotrichum acutatum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.06
Sequencing read coverage depth 257x
# of contigs 389
# of scaffolds 389
# of scaffolds >= 2Kbp 383
Scaffold N50 49
Scaffold L50 (Mbp) 0.30
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.15, 0.93, 0.90


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 59581 56829 95.4%
Ests est.fasta 200564380 196870010 98.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1672 1472
transcript 1501 1311
exon 534 330
intron 96 65
description:
protein length (aa) 442 374
exons per gene 2.81 2
# of gene models 15036


Collaborators

Michael Thon, University of Salamanca, Spain

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.