Info • Colletotrichum acutatum COL14

Status

The genome sequence and gene prediction of Colletotrichum acutatum COL14 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 20, 2024. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 441 ExternalModels were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 51.84
Sequencing read coverage depth 23.0x
# of contigs 29
# of scaffolds 29
# of scaffolds >= 2Kbp 29
Scaffold N50 6
Scaffold L50 (Mbp) 3.28
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.55, 6.54, 5.22


Gene Models FilteredModels1
length (bp) of: average median
gene 1611 1384
transcript 1457 1239
exon 519 291
intron 88 64
description:
protein length (aa) 486 413
exons per gene 2.81 2
# of gene models 13014


Genome Reference(s)

Funding

This project was not sequenced at the JGI.