Status
The genome sequence and gene prediction of Colletotrichum acutatum COL14 have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 20, 2024. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 441 ExternalModels were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.
Genome Assembly | |
Genome Assembly size (Mbp) | 51.84 |
Sequencing read coverage depth | 23.0x |
# of contigs | 29 |
# of scaffolds | 29 |
# of scaffolds >= 2Kbp | 29 |
Scaffold N50 | 6 |
Scaffold L50 (Mbp) | 3.28 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 6.55, 6.54, 5.22 |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1611 | 1384 |
transcript | 1457 | 1239 |
exon | 519 | 291 |
intron | 88 | 64 |
description: | ||
protein length (aa) | 486 | 413 |
exons per gene | 2.81 | 2 |
# of gene models | 13014 |
Genome Reference(s)
Turco Silvia, Brugneti Federico, Fiorenzani Chiara, Baroncelli Riccardo, Mazzaglia Angelo
Hybrid de novo assembly of the genome of Colletotrichum acutatum sensu stricto isolate COL14 from olive fruit in Central Italy
J Plant Pathol. 2024;: doi: 10.1007/s42161-024-01776-z
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Glomerellaceae Colletotrichum
- JGI EcoGroup Portals: Plant Pathogens