Status
The genome sequence and gene prediction of Colletotrichum fioriniae PJ7 have not been determined by the JGI, but were provided by Michael Thon at the University of Salamanca, Spain. Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Colletotrichum fioriniae PJ7
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 49.00 |
| Sequencing read coverage depth | 49.7x |
| # of contigs | 1335 |
| # of scaffolds | 1096 |
| # of scaffolds >= 2Kbp | 646 |
| Scaffold N50 | 102 |
| Scaffold L50 (Mbp) | 0.14 |
| # of gaps | 239 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.60, 0.56, 0.55 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1672 | 1434 |
| transcript | 1489 | 1263 |
| exon | 511 | 286 |
| intron | 98 | 65 |
| description: | ||
| protein length (aa) | 496 | 421 |
| exons per gene | 2.91 | 2 |
| # of gene models | 13759 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Baroncelli R, Sreenivasaprasad S, Sukno SA, Thon MR, Holub E
Draft Genome Sequence of Colletotrichum acutatum Sensu Lato (Colletotrichum fioriniae).
Genome Announc. 2014 Apr 10;2(2):. doi: 10.1128/genomeA.00112-14
Baroncelli R, Sreenivasaprasad S, Sukno SA, Thon MR, Holub E
Draft Genome Sequence of Colletotrichum acutatum Sensu Lato (Colletotrichum fioriniae).
Genome Announc. 2014 Apr 10;2(2):. doi: 10.1128/genomeA.00112-14
Funding
This project was not sequenced at the JGI.
