Status
[April 2016] The Colletotrichum godetiae CBS 193.32 genome was sequenced using PacBio reads, assembled with Falcon, improved with finisherSC and polished with Quiver. Mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Colletotrichum godetiae v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 51.65 |
| Sequencing read coverage depth | 235x |
| # of contigs | 194 |
| # of scaffolds | 194 |
| # of scaffolds >= 2Kbp | 190 |
| Scaffold N50 | 21 |
| Scaffold L50 (Mbp) | 0.74 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.68, 2.10, 1.84 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 66725 | 53444 | 80.1% |
| Ests | est.fasta | 142354363 | 139116047 | 97.7% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1633 | 1434 |
| transcript | 1484 | 1286 |
| exon | 535 | 339 |
| intron | 86 | 64 |
| description: | ||
| protein length (aa) | 433 | 364 |
| exons per gene | 2.77 | 2 |
| # of gene models | 16071 |
Collaborators
Michael Thon, University of Salamanca, Spain
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
