Info • Colletotrichum limetticola KLA-Anderson

Status

The genome sequence and gene prediction of Colletotrichum limetticola KLA-Anderson have not been determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Oct 20, 2024. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 955 ExternalModels were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 50.48
Sequencing read coverage depth 85.0x
# of contigs 1779
# of scaffolds 1750
# of scaffolds >= 2Kbp 1317
Scaffold N50 229
Scaffold L50 (Mbp) 0.07
# of gaps 29
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.39, 0.29, 0.26


Gene Models FilteredModels1
length (bp) of: average median
gene 1597 1381
transcript 1452 1239
exon 520 294
intron 83 64
description:
protein length (aa) 484 413
exons per gene 2.79 2
# of gene models 14293


Genome Reference(s)

Funding

This project was not sequenced at the JGI.