Status
The genome sequence and gene prediction of Colletotrichum lupini IMI 504893 have not been determined by the Joint Genome Institute (JGI), but were provided by Riccardo Baroncelli at the University of Salamanca. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.
Summary statistics for the Colletotrichum lupini release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 63.41 |
| Sequencing read coverage depth | |
| # of contigs | 11 |
| # of scaffolds | 11 |
| # of scaffolds >= 2Kbp | 11 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 7.87 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 8.19, 8.00, 7.88 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1740 | 1348 |
| transcript | 1387 | 1092 |
| exon | 334 | 160 |
| intron | 114 | 69 |
| description: | ||
| protein length (aa) | 462 | 364 |
| exons per gene | 4.15 | 3 |
| # of gene models | 18324 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Baroncelli R, Pensec F, Da Lio D, Boufleur T, Vicente I, Sarrocco S, Picot A, Baraldi E, Sukno S, Thon M, Le Floch G
Complete Genome Sequence of the Plant-Pathogenic Fungus Colletotrichum lupini.
Mol Plant Microbe Interact. 2021 Dec;34(12):1461-1464. doi: 10.1094/MPMI-07-21-0173-A
Baroncelli R, Pensec F, Da Lio D, Boufleur T, Vicente I, Sarrocco S, Picot A, Baraldi E, Sukno S, Thon M, Le Floch G
Complete Genome Sequence of the Plant-Pathogenic Fungus Colletotrichum lupini.
Mol Plant Microbe Interact. 2021 Dec;34(12):1461-1464. doi: 10.1094/MPMI-07-21-0173-A
Funding
This project was not sequenced at the JGI.
