Status
[June 2021] [May 2021] The Coniochaeta ligniaria R110-5 genome was sequenced with Illumina NovaSEQ6000 platform, assembled with MEGAHIT v1.2.9, binned using METABAT version 2.12.1, and annotated with the JGI Annotation Pipeline.
Summary statistics for the Coniochaeta ligniaria R110-5 release are
below.
Genome Assembly | |
Genome Assembly size (Mbp) | 32.10 |
Sequencing read coverage depth | 3.68x |
# of contigs | 475 |
# of scaffolds | 475 |
# of scaffolds >= 2Kbp | 475 |
Scaffold N50 | 71 |
Scaffold L50 (Mbp) | 0.12 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.73, 0.73, 0.61 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
EstClusters | ESTClusters | 6641 | 6470 | 97.4% |
Ests | est.fasta | 289858 | 269019 | 92.8% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1714 | 1433 |
transcript | 1519 | 1266 |
exon | 537 | 303 |
intron | 108 | 66 |
description: | ||
protein length (aa) | 496 | 412 |
exons per gene | 2.83 | 2 |
# of gene models | 10509 |
Collaborators
Mike Wilkins - Colorado State University
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Nelson AR, Narrowe AB, Rhoades CC, Fegel TS, Daly RA, Roth HK, Chu RK, Amundson KK, Young RB, Steindorff AS, Mondo SJ, Grigoriev IV, Salamov A, Borch T, Wilkins MJ
Wildfire-dependent changes in soil microbiome diversity and function.
Nat Microbiol. 2022 Aug 25;():. doi: 10.1038/s41564-022-01203-y
Nelson AR, Narrowe AB, Rhoades CC, Fegel TS, Daly RA, Roth HK, Chu RK, Amundson KK, Young RB, Steindorff AS, Mondo SJ, Grigoriev IV, Salamov A, Borch T, Wilkins MJ
Wildfire-dependent changes in soil microbiome diversity and function.
Nat Microbiol. 2022 Aug 25;():. doi: 10.1038/s41564-022-01203-y
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Sordariomycetidae Coniochaetales
- JGI Pyrophilous Fungi EcoGroup portal
Funding
This project was not sequenced at the JGI.