Status
The genome sequence and gene models of Colletotrichum orchidophilum IMI 309357 have not been determined by the JGI, but were downloaded from NCBI on Oct 25, 2016. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Assembly Method :: SPAdes v. 3.8.2
Sequencing Technology :: Illumina HiSeq
Summary statistics for the Colletotrichum orchidophilum
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 48.56 |
| Sequencing read coverage depth | 200.0x |
| # of contigs | 328 |
| # of scaffolds | 321 |
| # of scaffolds >= 2Kbp | 321 |
| Scaffold N50 | 57 |
| Scaffold L50 (Mbp) | 0.28 |
| # of gaps | 7 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.84, 0.82, 0.80 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1494 | 1263 |
| transcript | 1323 | 1101 |
| exon | 492 | 268 |
| intron | 103 | 67 |
| description: | ||
| protein length (aa) | 441 | 367 |
| exons per gene | 2.69 | 2 |
| # of gene models | 14496 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Baroncelli R, Sukno SA, Sarrocco S, Cafà G, Le Floch G, Thon MR
Whole-Genome Sequence of the Orchid Anthracnose Pathogen Colletotrichum orchidophilum.
Mol Plant Microbe Interact. 2018 Oct;31(10):979-981. doi: 10.1094/MPMI-03-18-0055-A
Baroncelli R, Sukno SA, Sarrocco S, Cafà G, Le Floch G, Thon MR
Whole-Genome Sequence of the Orchid Anthracnose Pathogen Colletotrichum orchidophilum.
Mol Plant Microbe Interact. 2018 Oct;31(10):979-981. doi: 10.1094/MPMI-03-18-0055-A
Funding
This project was not sequenced at the JGI.
