Status
The genome sequence and gene prediction of Colletotrichum simmondsii CBS122122 have not been determined by the JGI, but were provided by Michael Thon at the University of Salamanca, Spain. Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Colletotrichum simmondsii
CBS122122 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 50.47 |
| Sequencing read coverage depth | 39.38x |
| # of contigs | 1451 |
| # of scaffolds | 929 |
| # of scaffolds >= 2Kbp | 480 |
| Scaffold N50 | 55 |
| Scaffold L50 (Mbp) | 0.29 |
| # of gaps | 522 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 0.80, 0.79, 0.79 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1683 | 1438 |
| transcript | 1499 | 1263 |
| exon | 511 | 285 |
| intron | 98 | 64 |
| description: | ||
| protein length (aa) | 500 | 421 |
| exons per gene | 2.93 | 2 |
| # of gene models | 13884 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Baroncelli R, Amby DB, Zapparata A, Sarrocco S, Vannacci G, Le Floch G, Harrison RJ, Holub E, Sukno SA, Sreenivasaprasad S, Thon MR
Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum.
BMC Genomics. 2016 Aug 5;17():555. doi: 10.1186/s12864-016-2917-6
Baroncelli R, Amby DB, Zapparata A, Sarrocco S, Vannacci G, Le Floch G, Harrison RJ, Holub E, Sukno SA, Sreenivasaprasad S, Thon MR
Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum.
BMC Genomics. 2016 Aug 5;17():555. doi: 10.1186/s12864-016-2917-6
Funding
This project was not sequenced at the JGI.
