Status
The genome sequence and gene prediction of Colletotrichum sp. CBS 101611 have not been determined by the Joint Genome Institute (JGI), but were provided by Riccardo Baroncelli at the University of Salamanca. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.
Summary statistics for the Colletotrichum sp. release are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 62.97 |
| Sequencing read coverage depth | |
| # of contigs | 369 |
| # of scaffolds | 367 |
| # of scaffolds >= 2Kbp | 353 |
| Scaffold N50 | 60 |
| Scaffold L50 (Mbp) | 0.33 |
| # of gaps | 2 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.55, 1.51, 0.83 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1438 | 1182 |
| transcript | 1246 | 1029 |
| exon | 479 | 265 |
| intron | 122 | 66 |
| description: | ||
| protein length (aa) | 415 | 343 |
| exons per gene | 2.60 | 2 |
| # of gene models | 17391 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Goulin E, Boufleur TR, Negrini F, Carneiro GA, Baraldi E, Machado MA, Floch GL, Baroncelli R
Genome Sequence Resources of Colletotrichum abscissum, the Causal Agent of Citrus Post-Bloom Fruit Drop, and the Closely Related Species C. filicis.
Phytopathology. 2023 Jan;113(1):104-107. doi: 10.1094/PHYTO-05-22-0176-A
Goulin E, Boufleur TR, Negrini F, Carneiro GA, Baraldi E, Machado MA, Floch GL, Baroncelli R
Genome Sequence Resources of Colletotrichum abscissum, the Causal Agent of Citrus Post-Bloom Fruit Drop, and the Closely Related Species C. filicis.
Phytopathology. 2023 Jan;113(1):104-107. doi: 10.1094/PHYTO-05-22-0176-A
Funding
This project was not sequenced at the JGI.
