Info • Colletotrichum tofieldiae 0861

Status

The genome sequence and gene prediction of Colletotrichum tofieldiae strain 0861 have not been determined by the JGI, but were downloaded from NCBI on June 1, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Assembly Method :: MIRA v. 4.0; SPAdes v. 3.0 MAY-2014
Sequencing Technology :: 454;Illumina HiSeq

Summary statistics for the Colletotrichum tofieldiae release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.84
Sequencing read coverage depth 660x
# of contigs 1047
# of scaffolds 1046
# of scaffolds >= 2Kbp 502
Scaffold N50 73
Scaffold L50 (Mbp) 0.21
# of gaps 1
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.86, 0.83, 0.74


Gene Models ExternalModels
length (bp) of: average median
gene 1799 1554
transcript 1639 1416
exon 572 347
intron 88 62
description:
protein length (aa) 509 432
exons per gene 2.87 2
# of gene models 12501


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hacquard S, Kracher B, Hiruma K, Münch PC, Garrido-Oter R, Thon MR, Weimann A, Damm U, Dallery JF, Hainaut M, Henrissat B, Lespinet O, Sacristán S, Ver Loren van Themaat E, Kemen E, McHardy AC, Schulze-Lefert P, O'Connell RJ
Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi.
Nat Commun. 2016 May 6;7():11362. doi: 10.1038/ncomms11362

Funding

This project was not sequenced at the JGI.