Status
The genome sequence and gene prediction of Colletotrichum tofieldiae CBS 168.49 have not been determined by the Joint Genome Institute (JGI), but were provided by Ken Shirasu at the RIKEN Center for Sustainable Resource Science. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.
Summary statistics for the Colletotrichum tofieldiae
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 52.96 |
| Sequencing read coverage depth | |
| # of contigs | 1301 |
| # of scaffolds | 1300 |
| # of scaffolds >= 2Kbp | 385 |
| Scaffold N50 | 54 |
| Scaffold L50 (Mbp) | 0.29 |
| # of gaps | 1 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.44, 1.02, 0.93 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1508 | 1265 |
| transcript | 1320 | 1086 |
| exon | 478 | 267 |
| intron | 109 | 66 |
| description: | ||
| protein length (aa) | 440 | 362 |
| exons per gene | 2.76 | 2 |
| # of gene models | 16451 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Hacquard S, Kracher B, Hiruma K, Münch PC, Garrido-Oter R, Thon MR, Weimann A, Damm U, Dallery JF, Hainaut M, Henrissat B, Lespinet O, Sacristán S, Ver Loren van Themaat E, Kemen E, McHardy AC, Schulze-Lefert P, O'Connell RJ
Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi.
Nat Commun. 2016 May 6;7():11362. doi: 10.1038/ncomms11362
Hacquard S, Kracher B, Hiruma K, Münch PC, Garrido-Oter R, Thon MR, Weimann A, Damm U, Dallery JF, Hainaut M, Henrissat B, Lespinet O, Sacristán S, Ver Loren van Themaat E, Kemen E, McHardy AC, Schulze-Lefert P, O'Connell RJ
Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi.
Nat Commun. 2016 May 6;7():11362. doi: 10.1038/ncomms11362
Funding
This project was not sequenced at the JGI.
