Status
[January 2023] The Cronartium comandrae Tree 4 v2.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 153.18 |
| Sequencing read coverage depth | 56.51x |
| # of contigs | 665 |
| # of scaffolds | 665 |
| # of scaffolds >= 2Kbp | 663 |
| Scaffold N50 | 116 |
| Scaffold L50 (Mbp) | 0.42 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.95, 1.93, 1.43 |
RNA data included reads from bacteria, human, and fungi, accounting for the lower than expected mapping rate.
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 170224 | 73075 | 42.9% |
| Ests | est.fasta | 43526950 | 37796492 | 86.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1803 | 1559 |
| transcript | 1351 | 1117 |
| exon | 265 | 162 |
| intron | 112 | 85 |
| description: | ||
| protein length (aa) | 389 | 297 |
| exons per gene | 5.11 | 4 |
| # of gene models | 13579 |
Collaborators
- Richard Hamelin, University of British Columbia
Links
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Pucciniomycotina Pucciniales
- JGI EcoGroup Portals: Plant Pathogens
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
