Status
This genome was sequenced by Peng Zheng, Yongliang Xia, Guohua Xiao et al. in Key Laboratory of Insect Developmental and Evolutionary Biology, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai 200032, China (Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional chinese medicine). Please check their data use policies.
Summary statistics for the Cordyceps militaris CM01 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.27 |
| Sequencing read coverage depth | 147x |
| # of contigs | 597 |
| # of scaffolds | 32 |
| # of scaffolds >= 2Kbp | 13 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 4.55 |
| # of gaps | 565 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 6.26, 5.42, 4.55 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1743 | 1461 |
| transcript | 1517 | 1287 |
| exon | 507 | 249 |
| intron | 115 | 66 |
| description: | ||
| protein length (aa) | 506 | 429 |
| exons per gene | 2.99 | 3 |
| # of gene models | 9651 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Zheng P, Xia Y, Xiao G, Xiong C, Hu X, Zhang S, Zheng H, Huang Y, Zhou Y, Wang S, Zhao GP, Liu X, St Leger RJ, Wang C
Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional Chinese medicine.
Genome Biol. 2011 Nov 23;12(11):R116. doi: 10.1186/gb-2011-12-11-r116
Zheng P, Xia Y, Xiao G, Xiong C, Hu X, Zhang S, Zheng H, Huang Y, Zhou Y, Wang S, Zhao GP, Liu X, St Leger RJ, Wang C
Genome sequence of the insect pathogenic fungus Cordyceps militaris, a valued traditional Chinese medicine.
Genome Biol. 2011 Nov 23;12(11):R116. doi: 10.1186/gb-2011-12-11-r116
Funding
This project was not sequenced at the JGI.
