Info • Cronartium quercuum f. sp. fusiforme G11 v1.0

Status

The Cronartium quercuum f. sp. fusiforme genome was sequenced using the Illumina (ill-std-pe-unamp,.27kb,2x150)and 454 platforms(454-pe-ti) and assembled with AllPathsLG.

Summary statistics for the Cronartium quercuum f. sp. fusiforme G11 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 76.57
Sequencing read coverage depth 70.4x
# of contigs 10431
# of scaffolds 1198
# of scaffolds >= 2Kbp 751
Scaffold N50 70
Scaffold L50 (Mbp) 0.31
# of gaps 9233
% of scaffold length in gaps 22.7%
Three largest Scaffolds (Mbp) 1.88, 1.13, 1.04


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other RNAseq_assemblies 237538 40677 17.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1538 1198
transcript 1161 868
exon 267 160
intron 114 87
description:
protein length (aa) 331 225
exons per gene 4.35 3
# of gene models 13903


Collaborators

John M. Davis, Ph.D., School of Forest Resources & Conservation, University of Florida

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.