Info • Cryptodiaporthe populea CFL2025 v1.0


[November 2016] The Cryptodiaporthe populea CFL2025 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Cryptodiaporthe populea v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 56.94
Sequencing read coverage depth 119.84x
# of contigs 894
# of scaffolds 894
# of scaffolds >= 2Kbp 887
Scaffold N50 132
Scaffold L50 (Mbp) 0.12
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.55, 0.50, 0.50

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39969 37564 94.0%
Ests est.fasta 99797461 93634263 93.8%

Gene Models FilteredModels1
length (bp) of: average median
gene 1614 1363
transcript 1452 1206
exon 561 352
intron 104 70
protein length (aa) 420 338
exons per gene 2.59 2
# of gene models 13681


Richard Hamelin, University of British Columbia

Philippe Tanguay and Marie-Josée Bergeron, Canadian Forest Service, Laurentian Forestry Centre.


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.