Info • Cryptophyceae sp. CCMP2293 v1.0


(October 2016) The Cryptophyceae sp. CCMP2293 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assemblied with Rnnotator. The nucleomorph and plastid genomes were sequenced with Illumina technology and assembled with AllPathsLG.

Summary statistics for the Cryptophyceae sp. CCMP2293 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 534.47
Sequencing read coverage depth 128.2x
# of contigs 98750
# of scaffolds 10880
# of scaffolds >= 2Kbp 6184
Scaffold N50 344
Scaffold L50 (Mbp) 0.44
# of gaps 87870
% of scaffold length in gaps 20.6%
Three largest Scaffolds (Mbp) 2.20, 2.11, 2.04

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 258284466 234245107 90.7%
Other JGI_RNA_contigs 154716 105068 67.9%

Gene Models FilteredModels2
length (bp) of: average median
gene 3053 1693
transcript 824 660
exon 167 87
intron 569 446
protein length (aa) 249 196
exons per gene 4.93 3
# of gene models 33051


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.