Status
[Oct 2015] The Cryptococcus terricola JCM 24523 genome was
sequenced using the Illumina platform and assembled with AllPathsLG
release version R49403 (Gnerre et al.,
2011)
Mitochondrial genome was assembled separately and is available in
the downloads section.
Summary statistics for the Cryptococcus terricola JCM
24523 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 23.19 |
| Sequencing read coverage depth | 84.3x |
| # of contigs | 854 |
| # of scaffolds | 156 |
| # of scaffolds >= 2Kbp | 123 |
| Scaffold N50 | 13 |
| Scaffold L50 (Mbp) | 0.66 |
| # of gaps | 698 |
| % of scaffold length in gaps | 3.6% |
| Three largest Scaffolds (Mbp) | 1.75, 1.13, 0.95 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 41453 | 35096 | 84.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2071 | 1805 |
| transcript | 1596 | 1341 |
| exon | 246 | 148 |
| intron | 89 | 71 |
| description: | ||
| protein length (aa) | 463 | 374 |
| exons per gene | 6.48 | 5 |
| # of gene models | 8560 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Close D, Ojumu J, Zhang G
Draft Genome Sequence of Cryptococcus terricola JCM 24523, an Oleaginous Yeast Capable of Expressing Exogenous DNA.
Genome Announc. 2016 Nov 3;4(6):. doi: 10.1128/genomeA.01238-16
Close D, Ojumu J, Zhang G
Draft Genome Sequence of Cryptococcus terricola JCM 24523, an Oleaginous Yeast Capable of Expressing Exogenous DNA.
Genome Announc. 2016 Nov 3;4(6):. doi: 10.1128/genomeA.01238-16
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
