Status
[Jan 2013] The Cryptococcus vishniacii genome was
sequenced using the Illumina platform and assembled with AllPathsLG
release version R41043 (Gnerre
et al., 2010).
A 30.9 Kb mitochondrial genome was assembled separately and is
available in the download section.
Summary statistics for the Cryptococcus vishniacii v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 19.69 |
| Sequencing read coverage depth | 146.7x |
| # of contigs | 137 |
| # of scaffolds | 50 |
| # of scaffolds >= 2Kbp | 38 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 1.08 |
| # of gaps | 87 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 1.84, 1.61, 1.33 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | RNNotator assembled Illumina ESTs | 32517 | 28691 | 88.2% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2000 | 1719 |
| transcript | 1624 | 1344 |
| exon | 260 | 151 |
| intron | 74 | 63 |
| description: | ||
| protein length (aa) | 481 | 389 |
| exons per gene | 6.25 | 5 |
| # of gene models | 7232 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Nizovoy P, Bellora N, Haridas S, Sun H, Daum C, Barry K, Grigoriev IV, Libkind D, Connell LB, Moliné M
Unique genomic traits for cold adaptation in Naganishia vishniacii, a polyextremophile yeast isolated from Antarctica.
FEMS Yeast Res. 2021 Jan 22;21(1):. doi: 10.1093/femsyr/foaa056
Nizovoy P, Bellora N, Haridas S, Sun H, Daum C, Barry K, Grigoriev IV, Libkind D, Connell LB, Moliné M
Unique genomic traits for cold adaptation in Naganishia vishniacii, a polyextremophile yeast isolated from Antarctica.
FEMS Yeast Res. 2021 Jan 22;21(1):. doi: 10.1093/femsyr/foaa056
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
