Status
The genome sequence and gene models of Cyanidioschyzon merolae were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on June 11, 2018. In order to allow comparative analyses with other genomes sequenced by the JGI, a copy of this genome is incorporated into the JGI Genome Portal. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Cyanidioschyzon merolae strain
10D release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 16.55 |
| Sequencing read coverage depth | |
| # of contigs | 20 |
| # of scaffolds | 20 |
| # of scaffolds >= 2Kbp | 20 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 0.86 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.62, 1.28, 1.25 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1551 | 1275 |
| transcript | 1549 | 1275 |
| exon | 1541 | 1260 |
| intron | 250 | 236 |
| description: | ||
| protein length (aa) | 516 | 425 |
| exons per gene | 1.01 | 1 |
| # of gene models | 4803 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Nozaki H, Takano H, Misumi O, Terasawa K, Matsuzaki M, Maruyama S, Nishida K, Yagisawa F, Yoshida Y, Fujiwara T, Takio S, Tamura K, Chung SJ, Nakamura S, Kuroiwa H, Tanaka K, Sato N, Kuroiwa T
A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae.
BMC Biol. 2007 Jul 10;5():28. doi: 10.1186/1741-7007-5-28
Nozaki H, Takano H, Misumi O, Terasawa K, Matsuzaki M, Maruyama S, Nishida K, Yagisawa F, Yoshida Y, Fujiwara T, Takio S, Tamura K, Chung SJ, Nakamura S, Kuroiwa H, Tanaka K, Sato N, Kuroiwa T
A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae.
BMC Biol. 2007 Jul 10;5():28. doi: 10.1186/1741-7007-5-28
Funding
This project was not sequenced at the JGI.
