Info • Cyanidioschyzon merolae Soos

Status

The Cyanidioschyzon merolae Soos genome sequence and gene models were not determined by the Joint Genome Insitute, but were downloaded from the Red Algal Resources to Promote Integrative Research in Algal Genomics webpage on October 31, 2019. All published models are available as ExternalModels. In order to ensure this genome is comparable to those sequenced and annotated by the JGI, we applied standard filters to ExternalModels to produce the initial GeneCatalog. A total of 182 external models were excluded based on one of the following classifications: 1) association with repetitive elements, 2) pseudogenes with internal stop codons, 3) alternative isoforms or overlapping transcript models, 4) alleles on secondary scaffolds, and 5) short models lacking functional annotation. Please note that this copy of the genome is not maintained by Rossoni et al. and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 12.34
Sequencing read coverage depth 68.82x
# of contigs 34
# of scaffolds 34
# of scaffolds >= 2Kbp 34
Scaffold N50 9
Scaffold L50 (Mbp) 0.57
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.04, 0.85, 0.85


Gene Models FilteredModels1
length (bp) of: average median
gene 1522 1242
transcript 1508 1239
exon 1371 1146
intron 131 45
description:
protein length (aa) 503 413
exons per gene 1.10 1
# of gene models 4224


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.