Info • Cyanophora paradoxa CCMP329


The Cyanophora paradoxa CCMP329 genome assembly and gene models have not been determined by the JGI, but were downloaded from the publication supplemental datashare ( on September 25, 2019. Please note that this copy of the genome is not maintained by Rutgers University and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome. The mitochondrial and chloroplast assemblies, identified from fasta annotation, were separated from the nuclear genome and are available from the download section.

Summary statistics for the Cyanophora paradoxa CCMP329 release are below.
Genome Assembly
Genome Assembly size (Mbp) 98.35
Sequencing read coverage depth
# of contigs 704
# of scaffolds 704
# of scaffolds >= 2Kbp 704
Scaffold N50 132
Scaffold L50 (Mbp) 0.21
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.23, 0.90, 0.88

Gene Models ExternalModels
length (bp) of: average median
gene 2332 1730
transcript 1529 1095
exon 150 93
intron 89 68
protein length (aa) 510 365
exons per gene 10.22 8
# of gene models 25518

Genome Reference(s)



This project was not sequenced at the JGI.