Status
The Cyclotella cryptica CCMP332 genome sequence and gene models have not been determined by the JGI, but were downloaded from Traller et al. at UCLA on October 31, 2019. Please note that this copy of the genome is not maintained by UCLA and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Cyclotella cryptica CCMP332
v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 161.76 |
Sequencing read coverage depth | |
# of contigs | 130571 |
# of scaffolds | 116815 |
# of scaffolds >= 2Kbp | 11884 |
Scaffold N50 | 3336 |
Scaffold L50 (Mbp) | 0.01 |
# of gaps | 13756 |
% of scaffold length in gaps | 5.3% |
Three largest Scaffolds (Mbp) | 0.13, 0.12, 0.12 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1471 | 1131 |
transcript | 1326 | 1026 |
exon | 608 | 400 |
intron | 125 | 91 |
description: | ||
protein length (aa) | 442 | 342 |
exons per gene | 2.18 | 1 |
# of gene models | 21121 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Traller JC, Cokus SJ, Lopez DA, Gaidarenko O, Smith SR, McCrow JP, Gallaher SD, Podell S, Thompson M, Cook O, Morselli M, Jaroszewicz A, Allen EE, Allen AE, Merchant SS, Pellegrini M, Hildebrand M
Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype.
Biotechnol Biofuels. 2016;9():258. doi: 10.1186/s13068-016-0670-3
Traller JC, Cokus SJ, Lopez DA, Gaidarenko O, Smith SR, McCrow JP, Gallaher SD, Podell S, Thompson M, Cook O, Morselli M, Jaroszewicz A, Allen EE, Allen AE, Merchant SS, Pellegrini M, Hildebrand M
Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype.
Biotechnol Biofuels. 2016;9():258. doi: 10.1186/s13068-016-0670-3
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Heterokonta Ochrophyta Bacillariophyta Coscinodiscophyceae
Funding
This project was not sequenced at the JGI.