Info • Cyclotella cryptica CCMP322


The Cyclotella cryptica CCMP322 genome sequence and gene models have not been determined by the JGI, but were downloaded from Traller et al. at UCLA on October 31, 2019. Please note that this copy of the genome is not maintained by UCLA and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Cyclotella cryptica CCMP322 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 161.76
Sequencing read coverage depth
# of contigs 130571
# of scaffolds 116815
# of scaffolds >= 2Kbp 11884
Scaffold N50 3336
Scaffold L50 (Mbp) 0.01
# of gaps 13756
% of scaffold length in gaps 5.3%
Three largest Scaffolds (Mbp) 0.13, 0.12, 0.12

Gene Models ExternalModels
length (bp) of: average median
gene 1471 1131
transcript 1326 1026
exon 608 400
intron 125 91
protein length (aa) 442 342
exons per gene 2.18 1
# of gene models 21121

Genome Reference(s)


This project was not sequenced at the JGI.