Info • Cyclotella cryptica CCMP332 v2.0

Status

The Cyclotella cryptica CCMP332 genome sequence and gene models have not been determined by the JGI, but were downloaded from CoGe on October 24, 2022. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 16980 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 171.14
Sequencing read coverage depth
# of contigs 756
# of scaffolds 662
# of scaffolds >= 2Kbp 660
Scaffold N50 101
Scaffold L50 (Mbp) 0.49
# of gaps 94
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.50, 2.10, 2.02


Gene Models FilteredModels1
length (bp) of: average median
gene 2506 1983
transcript 2266 1818
exon 798 546
intron 132 91
description:
protein length (aa) 519 421
exons per gene 2.84 2
# of gene models 14429


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.