Info • Daldinia bambusicola CBS 122872 v1.0

Status

[July 2019] The Daldinia bambusicola CBS 122872 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Daldinia bambusicola v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.03
Sequencing read coverage depth 113.7x
# of contigs 453
# of scaffolds 448
# of scaffolds >= 2Kbp 374
Scaffold N50 49
Scaffold L50 (Mbp) 0.25
# of gaps 5
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.69, 0.69, 0.67


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 61250 58847 96.1%
Ests est.fasta 224401574 222984342 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2044 1810
transcript 1862 1640
exon 630 391
intron 95 69
description:
protein length (aa) 487 408
exons per gene 2.96 3
# of gene models 10508


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.