Info • Daldinia caldariorum CBS 122874 v1.0

Status

[July 2019] The Daldinia caldariorum CBS 122874 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Daldinia caldariorum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.56
Sequencing read coverage depth 124.35x
# of contigs 49
# of scaffolds 45
# of scaffolds >= 2Kbp 44
Scaffold N50 8
Scaffold L50 (Mbp) 1.44
# of gaps 4
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.98, 3.89, 2.65


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 49053 47829 97.5%
Ests est.fasta 123653493 123066060 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 2053 1832
transcript 1870 1655
exon 628 393
intron 94 70
description:
protein length (aa) 486 409
exons per gene 2.98 3
# of gene models 10402


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.