Info • Daldinia decipiens CBS 113046 v1.0

Status

[July 2019] The Daldinia decipiens CBS 113046 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Daldinia decipiens v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.26
Sequencing read coverage depth 141.86170501x
# of contigs 100
# of scaffolds 96
# of scaffolds >= 2Kbp 95
Scaffold N50 16
Scaffold L50 (Mbp) 0.79
# of gaps 4
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.87, 1.81, 1.44


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 43789 42964 98.1%
Ests est.fasta 134325805 133536866 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2024 1803
transcript 1856 1645
exon 618 389
intron 86 65
description:
protein length (aa) 483 406
exons per gene 3.00 3
# of gene models 10742


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.