Info • Daldinia eschscholtzii FL0578 v1.0

Status

[July 2019] The Daldinia eschscholtzii FL0578 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Daldinia eschscholtzii FL0578 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.82
Sequencing read coverage depth 140.6x
# of contigs 222
# of scaffolds 219
# of scaffolds >= 2Kbp 191
Scaffold N50 27
Scaffold L50 (Mbp) 0.48
# of gaps 3
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.62, 1.21, 0.90


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 49610 48315 97.4%
Ests est.fasta 147958527 146705914 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 2025 1799
transcript 1856 1638
exon 625 395
intron 88 66
description:
protein length (aa) 485 411
exons per gene 2.97 3
# of gene models 11046


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.