Info • Daldinia loculata CBS 113971 v1.0

Status

[July 2019] The Daldinia loculata CBS 113971 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Daldinia loculata v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.82
Sequencing read coverage depth 93.29x
# of contigs 268
# of scaffolds 260
# of scaffolds >= 2Kbp 227
Scaffold N50 29
Scaffold L50 (Mbp) 0.44
# of gaps 8
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.31, 1.17, 1.01


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40431 39747 98.3%
Ests est.fasta 148587647 147233163 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 2014 1783
transcript 1845 1623
exon 620 392
intron 88 65
description:
protein length (aa) 482 404
exons per gene 2.97 3
# of gene models 10825


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.