Status
[February 2021] The Debaryomyces subglobosus dep8 genome was not sequenced by the JGI. The assembly was provided by Eric Young and it was annotated using the JGI Fungal Annotation Pipeline. The transcriptome was sequenced with Illumina at the JGI and assembled using Trinity.
Summary statistics for the Debaryomyces subglobosus dep8
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 11.84 |
| Sequencing read coverage depth | |
| # of contigs | 13 |
| # of scaffolds | 13 |
| # of scaffolds >= 2Kbp | 12 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 2.00 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.28, 2.20, 2.00 |
Please note RNA data suffers from contamination. Zero
accuracy/unmapped contigs are BLASTing to Komagataella pastoris
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 424138595 | 415531950 | 98.0% |
| Other | Trinity_assembled_Illumina_transcriptome | 24533 | 8588 | 35.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1740 | 1502 |
| transcript | 1714 | 1485 |
| exon | 1383 | 1196 |
| intron | 108 | 59 |
| description: | ||
| protein length (aa) | 500 | 420 |
| exons per gene | 1.24 | 1 |
| # of gene models | 5831 |
Collaborators
- Eric Young, Worchester Polytechnic Institute, Worchester, MA
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetales Debaryomycetaceae
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
