Info • Valsariales sp. FL0756 v1.0

Status

[November 2018] The genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Valsariales sp. FL0756 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.39
Sequencing read coverage depth 184.865564602x
# of contigs 1097
# of scaffolds 1086
# of scaffolds >= 2Kbp 966
Scaffold N50 185
Scaffold L50 (Mbp) 0.06
# of gaps 11
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.23, 0.22, 0.22


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 37691 36686 97.3%
Ests est.fasta 127089878 125195099 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1850 1620
transcript 1676 1445
exon 574 362
intron 93 58
description:
protein length (aa) 472 390
exons per gene 2.92 3
# of gene models 11844


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.