Info • Diacronema lutheri NIVA-4/92

Status

The Diacronema lutheri NIVA-4/92 genome assembly and gene models have not been determined by the JGI, but were downloaded from NCBI on September 16, 2022. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 669 models from D. lutheri and generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 43.50
Sequencing read coverage depth 315x
# of contigs 103
# of scaffolds 103
# of scaffolds >= 2Kbp 103
Scaffold N50 16
Scaffold L50 (Mbp) 0.85
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.04, 1.86, 1.71


Gene Models FilteredModels1
length (bp) of: average median
gene 2235 1543
transcript 1890 1356
exon 798 454
intron 254 160
description:
protein length (aa) 630 452
exons per gene 2.37 2
# of gene models 13777


Genome Reference(s)

Funding

This project was not sequenced at the JGI.