Info • Diaporthe vochysiae LGMF1583 v1.0


[June 2021] The Diaporthe vochysiae LGMF1583 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The transcriptome has some contamination, accounting for the somewhat poor RNA mapping rate. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 60.11
Sequencing read coverage depth 41.79x
# of contigs 11
# of scaffolds 10
# of scaffolds >= 2Kbp 10
Scaffold N50 3
Scaffold L50 (Mbp) 8.38
# of gaps 1
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 14.76, 10.20, 8.38

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 46336 35965 77.6%
Ests est.fasta 166796849 160920684 96.5%

Gene Models FilteredModels1
length (bp) of: average median
gene 1821 1585
transcript 1628 1420
exon 548 342
intron 100 71
protein length (aa) 478 404
exons per gene 2.97 2
# of gene models 17777


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.