Status
[April 2024] The Didymella americana B211-43 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 36.11 |
| Sequencing read coverage depth | 188.17x |
| # of contigs | 353 |
| # of scaffolds | 341 |
| # of scaffolds >= 2Kbp | 288 |
| Scaffold N50 | 28 |
| Scaffold L50 (Mbp) | 0.44 |
| # of gaps | 12 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.30, 1.13, 0.83 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 48416 | 47063 | 97.2% |
| Ests | est.fasta | 196738467 | 182242996 | 92.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1815 | 1547 |
| transcript | 1666 | 1435 |
| exon | 609 | 383 |
| intron | 88 | 54 |
| description: | ||
| protein length (aa) | 477 | 391 |
| exons per gene | 2.73 | 2 |
| # of gene models | 13441 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes Pleosporales
- JGI EcoGroup Portals: Plant Pathogens
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
