Status
The genome sequence and gene prediction of Didymella zeae-maydis have not been determined by the JGI, but were provided by B. Gillian Turgeon. JGI tools were used to add functional annotation to gene models. Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated.
Summary statistics for the Didymella zea-maydis v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 32.60 |
| Sequencing read coverage depth | 1x |
| # of contigs | 2072 |
| # of scaffolds | 2072 |
| # of scaffolds >= 2Kbp | 856 |
| Scaffold N50 | 139 |
| Scaffold L50 (Mbp) | 0.07 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.27, 0.26, 0.24 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1738 | 1405 |
| transcript | 1563 | 1278 |
| exon | 529 | 296 |
| intron | 91 | 55 |
| description: | ||
| protein length (aa) | 521 | 426 |
| exons per gene | 2.95 | 2 |
| # of gene models | 11614 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Condon BJ, Elliott C, González JB, Yun SH, Akagi Y, Wiesner-Hanks T, Kodama M, Turgeon BG
Clues to an Evolutionary Mystery: The Genes for T-Toxin, Enabler of the Devastating 1970 Southern Corn Leaf Blight Epidemic, Are Present in Ancestral Species, Suggesting an Ancient Origin.
Mol Plant Microbe Interact. 2018 Nov;31(11):1154-1165. doi: 10.1094/MPMI-03-18-0070-R
Condon BJ, Elliott C, González JB, Yun SH, Akagi Y, Wiesner-Hanks T, Kodama M, Turgeon BG
Clues to an Evolutionary Mystery: The Genes for T-Toxin, Enabler of the Devastating 1970 Southern Corn Leaf Blight Epidemic, Are Present in Ancestral Species, Suggesting an Ancient Origin.
Mol Plant Microbe Interact. 2018 Nov;31(11):1154-1165. doi: 10.1094/MPMI-03-18-0070-R
Funding
This project was not sequenced at the JGI.
