Info • Helotiales sp. P5P66 v1.0

Status

[February 2021] The Helotiales sp. P5P66 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 49.38
Sequencing read coverage depth
# of contigs 64
# of scaffolds 64
# of scaffolds >= 2Kbp 63
Scaffold N50 10
Scaffold L50 (Mbp) 2.23
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.89, 2.79, 2.73


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 42919 40239 93.8%
Ests est.fasta 197953242 194922482 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1798 1576
transcript 1616 1404
exon 528 337
intron 91 60
description:
protein length (aa) 459 379
exons per gene 3.06 3
# of gene models 14248


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.