Status
v1.0 (September, 2010): The assembly release version 1.0 of Dothistroma septosporum was generated using the Newbler assembler and Roche 454, Illumina Solexa and Fosmid Sanger input data.
Summary statistics for the Dothistroma septosporum v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 30.21 |
| Sequencing read coverage depth | 34.28 |
| # of contigs | 264 |
| # of scaffolds | 20 |
| # of scaffolds >= 2Kbp | 20 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 2.60 |
| # of gaps | 122 |
| % of scaffold length in gaps | 0.4% |
| Three largest Scaffolds (Mbp) | 5.11, 3.31, 2.75 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | ESTS | 1592996 | 1549949 | 97.3% |
| Other | GenBank | 5 | 5 | 100.0% |
| Other | Isotigs | 13184 | 13029 | 98.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1896 | 1568 |
| transcript | 1778 | 1451 |
| exon | 773 | 433 |
| intron | 93 | 58 |
| description: | ||
| protein length (aa) | 408 | 329 |
| exons per gene | 2.30 | 2 |
| # of gene models | 12580 |
Collaborators
- Rosie Bradshaw, Ph.D., Institute of Molecular BioSciences, Massey University, New Zealand
- Richard Hamelin, Ph.D., Laurentian Forestry Centre, Canadian Forest Service
- Stephen B. Goodwin, Ph.D., USDA-ARS, Purdue University
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
de Wit PJ, van der Burgt A, Ökmen B, Stergiopoulos I, Abd-Elsalam KA, Aerts AL, Bahkali AH, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths SA, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Jashni MK, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, Schijlen E, Sun H, van den Burg HA, van Ham RC, Zhang S, Goodwin SB, Grigoriev IV, Collemare J, Bradshaw RE
The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry.
PLoS Genet. 2012;8(11):e1003088. doi: 10.1371/journal.pgen.1003088
Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.
PLoS Pathog. 2012;8(12):e1003037. doi: 10.1371/journal.ppat.1003037
de Wit PJ, van der Burgt A, Ökmen B, Stergiopoulos I, Abd-Elsalam KA, Aerts AL, Bahkali AH, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths SA, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Jashni MK, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, Schijlen E, Sun H, van den Burg HA, van Ham RC, Zhang S, Goodwin SB, Grigoriev IV, Collemare J, Bradshaw RE
The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry.
PLoS Genet. 2012;8(11):e1003088. doi: 10.1371/journal.pgen.1003088
Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.
PLoS Pathog. 2012;8(12):e1003037. doi: 10.1371/journal.ppat.1003037
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
