Status
The genome sequence and gene models of Dunaliella salina were downloaded from Phytozome, on May 3, 2018. Please note that this copy of the genome is not maintained and is therefore not automatically updated. The latest data is available at Phytozome.
Summary statistics for the Dunaliella salina release are
below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 343.70 |
| Sequencing read coverage depth | |
| # of contigs | 53869 |
| # of scaffolds | 5512 |
| # of scaffolds >= 2Kbp | 3903 |
| Scaffold N50 | 310 |
| Scaffold L50 (Mbp) | 0.35 |
| # of gaps | 48357 |
| % of scaffold length in gaps | 18.3% |
| Three largest Scaffolds (Mbp) | 1.55, 1.46, 1.40 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 11502 | 7747 |
| transcript | 1768 | 1389 |
| exon | 227 | 124 |
| intron | 1436 | 941 |
| description: | ||
| protein length (aa) | 421 | 289 |
| exons per gene | 7.79 | 6 |
| # of gene models | 18801 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Polle JEW, Barry K, Cushman J, Schmutz J, Tran D, Hathwaik LT, Yim WC, Jenkins J, McKie-Krisberg Z, Prochnik S, Lindquist E, Dockter RB, Adam C, Molina H, Bunkenborg J, Jin E, Buchheim M, Magnuson J
Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga Dunaliella salina Strain CCAP19/18.
Genome Announc. 2017 Oct 26;5(43):. doi: 10.1128/genomeA.01105-17
Polle JEW, Barry K, Cushman J, Schmutz J, Tran D, Hathwaik LT, Yim WC, Jenkins J, McKie-Krisberg Z, Prochnik S, Lindquist E, Dockter RB, Adam C, Molina H, Bunkenborg J, Jin E, Buchheim M, Magnuson J
Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga Dunaliella salina Strain CCAP19/18.
Genome Announc. 2017 Oct 26;5(43):. doi: 10.1128/genomeA.01105-17
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
