Info • Echria (Arnium) macrotheca PSN4 v1.0

Status

[March 2022] This genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 37.83
Sequencing read coverage depth 259.36x
# of contigs 39
# of scaffolds 38
# of scaffolds >= 2Kbp 37
Scaffold N50 7
Scaffold L50 (Mbp) 1.90
# of gaps 1
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.91, 3.99, 2.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 39612 38602 97.5%
Ests est.fasta 74325590 73846286 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1918 1659
transcript 1762 1526
exon 629 394
intron 88 59
description:
protein length (aa) 497 410
exons per gene 2.80 2
# of gene models 12289


Collaborators

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.