Info • Edaphochlamys debaryana CCAP 11/70

Status

The Edaphochlamys debaryana CCAP 11/70 genome sequence and gene models were not determined by the JGI, but were provided by Rory Craig in July 2020. Please note that this copy of the genome is not maintained by Rory Craig and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

The genome was sequenced with Illumina and PacBio, assembled by Canu, and polished by arrow and pilon. Gene prediction was performed with braker2.

Summary statistics for the Edaphochlamys debaryana CCAP 11/70 release are below.
Genome Assembly
Genome Assembly size (Mbp) 142.14
Sequencing read coverage depth 40.11x PacBio, 43.4x Illumina
# of contigs 527
# of scaffolds 527
# of scaffolds >= 2Kbp 527
Scaffold N50 56
Scaffold L50 (Mbp) 0.73
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.22, 3.71, 2.84


Gene Models ExternalModels
length (bp) of: average median
gene 5493 4380
transcript 3006 2379
exon 269 130
intron 246 200
description:
protein length (aa) 746 529
exons per gene 11.18 9
# of gene models 20450


Collaborators

 

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Craig RJ, Hasan AR, Ness RW, Keightley PD
Comparative genomics of Chlamydomonas.
Plant Cell. 2021 May 31;33(4):1016-1041. doi: 10.1093/plcell/koab026

Funding

This project was not sequenced at the JGI.