Status
The genome sequence and gene models of Elaphomyces granulatus OSC145934 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Genome Assembly | |
Genome Assembly size (Mbp) | 54.15 |
Sequencing read coverage depth | |
# of contigs | 10926 |
# of scaffolds | 8670 |
# of scaffolds >= 2Kbp | 5850 |
Scaffold N50 | 1255 |
Scaffold L50 (Mbp) | 0.01 |
# of gaps | 2256 |
% of scaffold length in gaps | 0.5% |
Three largest Scaffolds (Mbp) | 0.09, 0.08, 0.08 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1989 | 1636 |
transcript | 1778 | 1452 |
exon | 555 | 314 |
intron | 98 | 67 |
description: | ||
protein length (aa) | 504 | 407 |
exons per gene | 3.21 | 3 |
# of gene models | 7178 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Quandt CA, Kohler A, Hesse CN, Sharpton TJ, Martin F, Spatafora JW
Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome.
Environ Microbiol. 2015 Aug;17(8):2952-68. doi: 10.1111/1462-2920.12840
Quandt CA, Kohler A, Hesse CN, Sharpton TJ, Martin F, Spatafora JW
Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomycorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome.
Environ Microbiol. 2015 Aug;17(8):2952-68. doi: 10.1111/1462-2920.12840
Links
- JGI EcoGroup Portal: Ectomycorrhizal Fungi
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Eurotiomycetes Eurotiales
Funding
This project was not sequenced at the JGI.