Status

v1.0 (July 2009) complements the main Genome Portal at www.jgi.doe.gov/Ehux/

Assembly: 17126 consensi were generated by the JGI EST Pipeline from 16618 clusters of 28865 ESTs that fail to map to the main genomic assembly. The ESTs originate from 3 different strains of E. huxleyi under multiple conditions. The consensi range up to 3406 nt.

Annotation: 8564 ORFs were predicted by the JGI Annotation Pipeline on the above consensi. The ORFs range up to 3406 nt. 44% have start and stop codons, 35% have Pfam domains, and 56% have sequence similarity to proteins in NR.

Collaborators:

• Joint Genome Institute
• Betsy Read at California State University, San Marcos

Links:

• The main JGI Emiliania huxleyi Genome Portal for the genomic assembly
• Emiliania huxleyi Genome Project at California State U San Marcos
• Biodiversity of Open Ocean Microcalcifiers at Station Biologique de Roscoff

Funding

This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No. DE-AC02-06NA25396.