Status
The genome of Endocarpon pallidulum was not sequenced at JGI, rather it was acquired from Jason Stajich in June, 2016. Please cite McDonald et al., 2013 if you use this genome in your work.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 41.44 |
| Sequencing read coverage depth | NA |
| # of contigs | 13340 |
| # of scaffolds | 5508 |
| # of scaffolds >= 2Kbp | 2427 |
| Scaffold N50 | 280 |
| Scaffold L50 (Mbp) | 0.04 |
| # of gaps | 7832 |
| % of scaffold length in gaps | 1.9% |
| Three largest Scaffolds (Mbp) | 0.23, 0.22, 0.21 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1407 | 1144 |
| transcript | 1294 | 1041 |
| exon | 559 | 315 |
| intron | 88 | 59 |
| description: | ||
| protein length (aa) | 431 | 347 |
| exons per gene | 2.32 | 2 |
| # of gene models | 11601 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
McDonald TR, Mueller O, Dietrich FS, Lutzoni F
High-throughput genome sequencing of lichenizing fungi to assess gene loss in the ammonium transporter/ammonia permease gene family.
BMC Genomics. 2013 Apr 4;14():225. doi: 10.1186/1471-2164-14-225
McDonald TR, Mueller O, Dietrich FS, Lutzoni F
High-throughput genome sequencing of lichenizing fungi to assess gene loss in the ammonium transporter/ammonia permease gene family.
BMC Genomics. 2013 Apr 4;14():225. doi: 10.1186/1471-2164-14-225
Funding
This project was not sequenced at the JGI.
