Status
This genome was sequenced by Yan-Yan Wang et al the State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences and not by the JGI.
Summary statistics for the Endocarpon pusillum Z07020 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 37.13 |
| Sequencing read coverage depth | |
| # of contigs | 1604 |
| # of scaffolds | 908 |
| # of scaffolds >= 2Kbp | 908 |
| Scaffold N50 | 57 |
| Scaffold L50 (Mbp) | 0.18 |
| # of gaps | 696 |
| % of scaffold length in gaps | 0.9% |
| Three largest Scaffolds (Mbp) | 0.80, 0.72, 0.65 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1766 | 1440 |
| transcript | 1592 | 1308 |
| exon | 625 | 339 |
| intron | 114 | 58 |
| description: | ||
| protein length (aa) | 531 | 436 |
| exons per gene | 2.55 | 2 |
| # of gene models | 9238 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Wang YY, Liu B, Zhang XY, Zhou QM, Zhang T, Li H, Yu YF, Zhang XL, Hao XY, Wang M, Wang L, Wei JC
Genome characteristics reveal the impact of lichenization on lichen-forming fungus Endocarpon pusillum Hedwig (Verrucariales, Ascomycota).
BMC Genomics. 2014 Jan 17;15():34. doi: 10.1186/1471-2164-15-34
Wang YY, Liu B, Zhang XY, Zhou QM, Zhang T, Li H, Yu YF, Zhang XL, Hao XY, Wang M, Wang L, Wei JC
Genome characteristics reveal the impact of lichenization on lichen-forming fungus Endocarpon pusillum Hedwig (Verrucariales, Ascomycota).
BMC Genomics. 2014 Jan 17;15():34. doi: 10.1186/1471-2164-15-34
Funding
This project was not sequenced at the JGI.
