Status
The Entomophaga maimaiga ARSEF 7190 genome was sequenced using PacBio, assembled with HiFiAsm and polished using RACON. HiC data were used to confirm that there were no misjoins in the polished assembly. Contigs were then oriented, ordered, and joined into chromosomes using the JUICER pipeline. A total of 29 chromosomes were identified, then annotated using the JGI Annotation Pipeline.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 1177.39 |
| Sequencing read coverage depth | 57.72x |
| # of contigs | 39 |
| # of scaffolds | 29 |
| # of scaffolds >= 2Kbp | 29 |
| Scaffold N50 | 9 |
| Scaffold L50 (Mbp) | 37.65 |
| # of gaps | 10 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 165.05, 143.04, 57.30 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 46822 | 40499 | 86.5% |
| Ests | est.fasta | 107127219 | 106253958 | 99.2% |
| Gene Models | FilteredModels3 | |
| length (bp) of: | average | median |
| gene | 1407 | 1189 |
| transcript | 1188 | 990 |
| exon | 358 | 192 |
| intron | 96 | 43 |
| description: | ||
| protein length (aa) | 343 | 276 |
| exons per gene | 3.32 | 2 |
| # of gene models | 14701 |
Collaborators
- Ann Hajek, Cornell University, NY
- Andrii Gryganskyi, Duke University, NC
- Jason Stajich, UC Riverside, California
Links
- 1000 Fungal Genomes Project
- JGI PhyloGroup Portals: Fungi Zoopagomycota Entomophthoromycotina
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
