Info • Erysiphe pisi Palampur-1 v2.0


[December 2019] The Erysiphe pisi Palampur-1 genome was sequenced using PacBio reads and assembled with Falcon (pb-assembly 0.0.2, falcon-kit 1.2.3, pypeflow 2.1.0). Mitochondrial genome was assembled separately using Flye version 2.4 and is available in the downloads section. Post assembly analysis identified low level insect contamination best matching Tyrophagus putrescentiae (full ITS 99.2% match). Contaminant insect was identified and removed from the main assembly prior to release.

Summary statistics for the Erysiphe pisi Palampur-1 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 76.36
Sequencing read coverage depth 229.38x
# of contigs 538
# of scaffolds 533
# of scaffolds >= 2Kbp 492
Scaffold N50 43
Scaffold L50 (Mbp) 0.56
# of gaps 5
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.77, 1.55, 1.38

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 419203 151045 36.0%
Ests est.fasta 275456466 165688487 60.2%

Gene Models FilteredModels1
length (bp) of: average median
gene 1650 1409
transcript 1488 1241
exon 514 300
intron 87 58
protein length (aa) 426 336
exons per gene 2.89 3
# of gene models 7543


Mary Wildermuth, University of California, Berkeley.



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.