Status
The genome sequence and gene models of Escovopsis weberi CC031208-10 were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Jan 29, 2020 and annotation provided by the authors. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds, and 5) unsupported short models. This resulted in the removal of 116 models from E. weberi and the generation of the FilteredModels1 gene track. All published models are available in the ExternalModels track. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Genome Assembly | |
Genome Assembly size (Mbp) | 27.13 |
Sequencing read coverage depth | 44x |
# of contigs | 747 |
# of scaffolds | 28 |
# of scaffolds >= 2Kbp | 28 |
Scaffold N50 | 4 |
Scaffold L50 (Mbp) | 2.58 |
# of gaps | 719 |
% of scaffold length in gaps | 1.6% |
Three largest Scaffolds (Mbp) | 5.72, 3.83, 3.71 |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1634 | 1397 |
transcript | 1418 | 1203 |
exon | 516 | 268 |
intron | 125 | 96 |
description: | ||
protein length (aa) | 473 | 401 |
exons per gene | 2.75 | 2 |
# of gene models | 6754 |
Collaborators
Irina Druzhinina, Nanjing Agricultural University, Jiangsu, PRC.
Genome Reference(s)
de Man TJ, Stajich JE, Kubicek CP, Teiling C, Chenthamara K, Atanasova L, Druzhinina IS, Levenkova N, Birnbaum SS, Barribeau SM, Bozick BA, Suen G, Currie CR, Gerardo NM
Small genome of the fungus Escovopsis weberi, a specialized disease agent of ant agriculture.
Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):3567-72. doi: 10.1073/pnas.1518501113
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreales
- JGI Mycoparasitic fungi EcoGroup portal