Status
The Eurotium rubrum genome was sequenced using the Illumina platform and assembled with AllPathsLG. The genome was annotated with the JGI annotation pipeline and custom analyses
Summary statistics for the Eurotium rubrum v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 26.21 |
| Sequencing read coverage depth | 91.7 |
| # of contigs | 371 |
| # of scaffolds | 110 |
| # of scaffolds >= 2Kbp | 96 |
| Scaffold N50 | 14 |
| Scaffold L50 (Mbp) | 0.62 |
| # of gaps | 261 |
| % of scaffold length in gaps | 0.5% |
| Three largest Scaffolds (Mbp) | 1.56, 1.54, 1.25 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| RNAseq contigs | RNAseq contigs | 30179 | 28649 | 94.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1719 | 1479 |
| transcript | 1557 | 1340 |
| exon | 507 | 294 |
| intron | 81 | 59 |
| description: | ||
| protein length (aa) | 457 | 381 |
| exons per gene | 3.07 | 3 |
| # of gene models | 10076 |
Collaborators
Igor Grigorev, DOE-Joint Genome Institute
Eviatar Nevo, University of Haifa, Israel
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Kis-Papo T, Weig AR, Riley R, Peršoh D, Salamov A, Sun H, Lipzen A, Wasser SP, Rambold G, Grigoriev IV, Nevo E
Genomic adaptations of the halophilic Dead Sea filamentous fungus Eurotium rubrum.
Nat Commun. 2014 May 9;5():3745. doi: 10.1038/ncomms4745
Kis-Papo T, Weig AR, Riley R, Peršoh D, Salamov A, Sun H, Lipzen A, Wasser SP, Rambold G, Grigoriev IV, Nevo E
Genomic adaptations of the halophilic Dead Sea filamentous fungus Eurotium rubrum.
Nat Commun. 2014 May 9;5():3745. doi: 10.1038/ncomms4745
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
