Info • Exidia glandulosa v1.0

Status

June 2013. The Exidia glandulosa genome was sequenced using Illumina technology and assembled using AllPathsLG version R44849. Subsequently it was annotated using the JGI annotation pipeline and custom analyses.

Summary statistics for the Exidia glandulosa v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 78.17
Sequencing read coverage depth 83.7x
# of contigs 4024
# of scaffolds 1727
# of scaffolds >= 2Kbp 1407
Scaffold N50 181
Scaffold L50 (Mbp) 0.12
# of gaps 2297
% of scaffold length in gaps 8.3%
Three largest Scaffolds (Mbp) 1.67, 0.77, 0.64


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other EST_contigs 58619 54489 93.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1556 1296
transcript 1244 1067
exon 258 151
intron 83 55
description:
protein length (aa) 368 308
exons per gene 4.83 4
# of gene models 26765


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Nagy LG, Riley R, Tritt A, Adam C, Daum C, Floudas D, Sun H, Yadav JS, Pangilinan J, Larsson KH, Matsuura K, Barry K, Labutti K, Kuo R, Ohm RA, Bhattacharya SS, Shirouzu T, Yoshinaga Y, Martin FM, Grigoriev IV, Hibbett DS
Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities.
Mol Biol Evol. 2016 Apr;33(4):959-70. doi: 10.1093/molbev/msv337

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.